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Genetic Testing CPT Codes

The complete 2026 CPT code reference for Gene Matrix clinical genetic testing — codes, descriptions, gene counts, and reimbursement ranges, pre-verified against CMS and Medicare fee schedules.

[ 20 Verified CPT Codes ][ 2026 CMS Fee Schedules ][ CLIA ID 14D2276402 ]

2026 CPT Code Reference

[ CMS & Medicare Verified ]
CPT CodeDescriptionGenesAvg. ReimbursementCategory
81432Hereditary breast cancer-related disorders (e.g., BRCA1, BRCA2) — full gene sequence analysis2$2,100 – $2,800Hereditary Cancer
81433Hereditary breast cancer-related disorders — duplication/deletion analysis2$850 – $1,200Hereditary Cancer
81445Targeted genomic sequence analysis panel, solid organ neoplasm, DNA analysis — 5-50 genes50$1,400 – $2,200Hereditary Cancer
81450Targeted genomic sequence analysis panel, hematolymphoid neoplasm — 5-50 genes50$1,400 – $2,200Hereditary Cancer
81455Targeted genomic sequence analysis panel, solid organ or hematolymphoid neoplasm — >50 genes108$2,800 – $4,500Hereditary Cancer
81479Unlisted molecular pathology procedure — custom panels, novel biomarkers, and research assays230Varies — submit for reviewPharmacogenomics
81225CYP2C19 gene analysis — common variants (e.g., *2, *3, *17) for clopidogrel & PPI metabolism1$180 – $260Pharmacogenomics
81226CYP2D6 gene analysis — common variants (*3-*6, *9, *10, *17, *41) for antidepressant & tamoxifen metabolism1$180 – $260Pharmacogenomics
81227CYP2C9 gene analysis — common variants (*2, *3) for warfarin & NSAID sensitivity1$180 – $260Pharmacogenomics
81230CYP3A4 gene analysis — common variant (*22) for statin & immunosuppressant metabolism1$160 – $240Pharmacogenomics
81231CYP3A5 gene analysis — common variants (*3, *6, *7) for tacrolimus & chemotherapy metabolism1$160 – $240Pharmacogenomics
81350SLCO1B1 gene analysis — common variant (*5) for simvastatin-induced myopathy risk1$160 – $240Pharmacogenomics
81400Molecular pathology procedure, Level 1 — single analyte (e.g., VKORC1, F5, F2, MTHFR)1$120 – $180Pharmacogenomics
81401Molecular pathology procedure, Level 2 — single analyte with common variants (e.g., HLA-B*57:01, TPMT, DPYD)1$140 – $200Pharmacogenomics
81408Molecular pathology procedure, Level 9 — full gene sequence analysis (e.g., CFTR, DMD, HBA1/HBA2)1$900 – $1,400Comprehensive
81442Noonan spectrum disorders gene analysis panel — 5-50 genes (PTPN11, SOS1, RAF1, KRAS, NRAS, BRAF, MAP2K1, SHOC2, CBL)9$1,200 – $1,800Pediatric / Inherited
81443Genetic testing for severe inherited conditions (e.g., SMA, CF) — carrier screening panel3$600 – $950Pediatric / Inherited
81228CYP2C19 gene analysis — full sequence (all exons) for rare variant detection1$450 – $650Pharmacogenomics
81435Hereditary colon cancer disorders (e.g., Lynch syndrome) — 5-50 genes including MLH1, MSH2, MSH6, PMS2, EPCAM5$1,400 – $2,000Hereditary Cancer
81437Hereditary colon cancer disorders — duplication/deletion analysis for Lynch syndrome genes5$700 – $1,100Hereditary Cancer

Reimbursement rates are estimates based on 2026 Medicare fee schedules and may vary by payer, region, and patient coverage. Always verify with your billing department.

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Physician reviewing a Gene Matrix clinical genetics report for billing
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Every order ships with a payer-ready superbill: CPT codes, ICD-10 crosswalk, ordering physician NPI, and CLIA laboratory identifiers included.

ICD-10 Crosswalk

Medical Necessity Mapping

Each panel maps to accepted ICD-10 indication codes, so medical-necessity documentation is consistent across Medicare and commercial payers.

Payer Verification

CMS · Medicare · Commercial

Codes and rates on this page are pre-verified against CMS, Medicare, and commercial payer fee schedules for 2026 and updated as schedules change.

Need a code that isn’t listed? Our provider team responds within one business day — contact us.

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